FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003940600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003940600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2865971
Sequences flagged as poor quality0
Sequence length20-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT67210.23451039804659574No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT32100.11200392467334806No Hit
GTGGGTGTTGAGCTTGAACGCTTTCTTAATTGGTGGCTGCTTTTAGGCCT31320.10928233398035082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)