FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003940627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003940627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766014
Sequences flagged as poor quality0
Sequence length20-73
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC30860.11156848808429748No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC29560.10686858417925578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)