FastQCFastQC Report
Wed 11 May 2022
EGAF00003946413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71324056
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAATG7009970398.28339403468586No Hit
GCACCATG2795320.39191826107029026No Hit
GCACAATA2205320.3091972223228584No Hit
GCACACTG1623810.227666525302487No Hit
GCCCAATG1154330.16184301128359835No Hit
GCACAAAG741080.1039032328727912No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)