FastQCFastQC Report
Wed 11 May 2022
EGAF00003946419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31192867
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGCA3078151598.68126261045515No Hit
CAGTTGCA859620.27558223487440253No Hit
AAGTTGAA597960.19169767241978752No Hit
AAGATGCA434910.1394261066159773No Hit
AATTTGCA394130.12635260490803876No Hit
ACGTTGCA391430.12548702240162793No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)