FastQCFastQC Report
Wed 11 May 2022
EGAF00003946420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31845311
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGCA3143084198.69848970857907No Hit
CAGTTGCA756830.23765822227328853No Hit
AAGTTGAA613990.19280389505381185No Hit
AAGATGCA427710.13430862710054867No Hit
AATTTGCA410330.12885099473514328No Hit
ACGTTGCA375100.11778814155716677No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)