FastQCFastQC Report
Wed 11 May 2022
EGAF00003946429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70054260
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGCAT6944571499.13132192103664No Hit
TGATGCAA1633450.2331692605132079No Hit
TGTTGCAT828630.11828402726686428No Hit
TGATGAAT785140.11207598224576207No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)