FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003946440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34011860
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGATGG3363535598.89301849413704No Hit
CAGGATGA853090.25082133114742916No Hit
NAGGATGG794030.23345680006915237No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)