FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003946458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21654242
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCACTT2147383699.16687917314307No Hit
CATCACTA387070.1787501959200419No Hit
CATCACAT217320.10035908899512622No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)