FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003946460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7548329
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGGAG744574998.64102372856297No Hit
GTGTGGAA221440.29336294165238425No Hit
GCGTGGAG141640.1876441792613968No Hit
GGGTGGAG91780.12158982471484749No Hit
GAGTGGAG81080.10741450193811107No Hit
GTGTGGAT79760.10566577053013985No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)