FastQCFastQC Report
Wed 14 Sep 2022
EGAF00003946644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42219952
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA505700.11977749287824864No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG430010.10184994999520607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)