FastQCFastQC Report
Wed 14 Sep 2022
EGAF00003946672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51657324
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1159240.2244096113070046No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG655410.12687649093088912No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG519550.10057625129787984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)