FastQCFastQC Report
Wed 14 Sep 2022
EGAF00003946761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41684596
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG646170.1550140968140845No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT635800.1525263672940479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)