FastQCFastQC Report
Wed 14 Sep 2022
EGAF00003946793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45842011
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT2467610.5382857222384942No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG622240.13573575557145606No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA569820.12430082964728577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)