FastQCFastQC Report
Wed 14 Sep 2022
EGAF00003946814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49907792
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG700960.14045101414224057No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA625770.12538523042654343No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG561120.112431341382524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)