FastQCFastQC Report
Thu 23 Feb 2023
EGAF00003946927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences330664394
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCATTCTCGACTGCCGGCGACGGCC10432440.3154993458412701No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC10304220.3116216982225186No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA7556170.22851477622353256No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA6467600.19559408625048394No Hit
CCACCTACTAAGAACGGCCATGCACCAC4983880.1507232133375691No Hit
TTCGGTCTTGATTAATGAAAACATTCTT4492010.13584801029408688No Hit
CATTCGCTTTACCGGATAAAACTGCGTG4259160.12880612721791873No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3759370.11369140639920244No Hit
CGTTCGTTATCGGAATTAACCAGACAAA3350520.10132690609561065No Hit
CTACACCTCTCATGTCTCTTCACCGTGC3333330.10080704365163672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)