FastQCFastQC Report
Sat 11 Mar 2023
EGAF00003946929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340453202
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5724640.16814763281327577No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA3519740.10338395936132215No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA3446180.10122330998079436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)