FastQCFastQC Report
Wed 8 Feb 2023
EGAF00003946931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379881682
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5909540.15556264700333722No Hit
CCACCTACTAAGAACGGCCATGCACCAC4741240.12480833440134131No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA4190180.1103022387902347No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA3868080.10182328296630001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)