FastQCFastQC Report
Wed 22 Feb 2023
EGAF00003946933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences310862313
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCCGCAGGCTCCACTCCTGGTGGTGC10348610.33290011581429624No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC8907750.28654969185666457No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA6719380.2161529307027964No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG5107520.16430167911669627No Hit
GTCGGGTCTGCGAGAGCGCCAGCTATCC4369130.14054871939397812No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA4221040.13578487399339398No Hit
GGGTCTGCGAGAGCGCCAGCTATCCTGA4172780.13423241819602622No Hit
TTCGGTCTTGATTAATGAAAACATTCTT4083220.13135139993634418No Hit
TGCCCTAGAGCCAATCCTTATCCCGAAG4004400.12881587225402905No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA3816030.12275627634540569No Hit
CCACCTACTAAGAACGGCCATGCACCAC3809070.12253238301035223No Hit
AGCTCCTTTAAGTTTCAGCTTTGCAACC3700000.11902375570370281No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA3439140.11063225924076553No Hit
CATTCGCTTTACCGGATAAAACTGCGTG3343750.1075636981443936No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT3279840.1055078040289818No Hit
ACACCCTCATGTCTCTTCACCGTGCCAG3156580.10154270453491736No Hit
CAGTCCTTAGAGCCAATCCTTATCCCGA3119540.10035118023457541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)