FastQCFastQC Report
Wed 22 Feb 2023
EGAF00003946935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences330637345
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCATTCTCGACTGCCGGCGACGGCC18693130.5653665649898078No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA14942270.4519232393424887No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC13784760.4169147922476815No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA9451180.28584732314494No Hit
CCACCTACTAAGAACGGCCATGCACCAC6932110.20965901477342191No Hit
TGCCCTAGAGCCAATCCTTATCCCGAAG6473350.19578399409177447No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA6123250.18519535353757452No Hit
ACACCCTCATGTCTCTTCACCGTGCCAG6070950.18361356004718704No Hit
GCTTCACAATGATAGGAAGAGCCGACAT5863480.17733870927375128No Hit
CAGTCCTTAGAGCCAATCCTTATCCCGA5842600.17670720166229256No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG5177140.15658061856261277No Hit
GTCGGGTCTGCGAGAGCGCCAGCTATCC5082140.15370737990894526No Hit
CTACACCTCTCATGTCTCTTCACCGTGC5039080.1524050466833987No Hit
CATTCGCTTTACCGGATAAAACTGCGTG4919350.14878385864125543No Hit
TTCGGTCTTGATTAATGAAAACATTCTT4591050.13885455074652864No Hit
TGAGCCGACATCGAAGGATCAAAAAGCG4405450.13324114975578455No Hit
GGGTCTGCGAGAGCGCCAGCTATCCTGA4230470.12794894660190306No Hit
CTCGTACTGAGCAGGATTACCATGGCAA4167070.1260314378582976No Hit
CGTTCGTTATCGGAATTAACCAGACAAA3991240.12071352677962012No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA3788490.11458143060034552No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA3616800.10938873223773317No Hit
CGTCTACTCTCGACTGCCGGCGACGGCC3495630.10572399194652377No Hit
ACGGCCATGCACCACCACCCACGGAATC3447270.10426136224871997No Hit
GCAGCCATACTCCCCCCGGAACCCAAAG3426420.10363076197578347No Hit

[OK]Adapter Content

Adapter graph