FastQCFastQC Report
Tue 14 Feb 2023
EGAF00003946937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368711276
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA9473340.2569311170185096No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA8846990.23994357037239078No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA8496280.23043179183920592No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC8129300.22047874662775432No Hit
CCACCTACTAAGAACGGCCATGCACCAC7852170.21296256749142656No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA6958530.18872571719233236No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC6891150.1868982710471811No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG5682440.15411625219728836No Hit
GCTTCACAATGATAGGAAGAGCCGACAT5313420.14410787914172715No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA5115020.13872697508714107No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA4402030.11938962235589452No Hit
TTCGGTCTTGATTAATGAAAACATTCTT3833860.10398000412658928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)