FastQCFastQC Report
Tue 28 Jun 2022
EGAF00003946938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368711276
Sequences flagged as poor quality0
Sequence length98
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGG7319490.198515491020676No Hit
GCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAG6214870.16855654829498623No Hit
CTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCT6024730.16339966776605985No Hit
GAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTC5323140.14437150004601432No Hit
GCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCT4652110.12617216512792517No Hit
GTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGA4583120.12430105338031486No Hit
ATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTG4446560.12059734240403323No Hit
GGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAA4110590.11148533466603283No Hit
GCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCA4075430.1105317429999076No Hit
GGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGA4027340.10922747043949912No Hit
CCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCA4017960.10897307084256355No Hit
GGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGC3854790.10454765695855744No Hit
GGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATC3780440.10253117401269822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)