FastQCFastQC Report
Thu 23 May 2024
EGAF00003946939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379700961
Total Bases10.6 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA8994650.23688773334445157No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA5984850.1576200909325589No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA5210080.1372153493180124No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA5003020.1317621105520457No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC4712280.12410503222297611No Hit
CCACCTACTAAGAACGGCCATGCACCAC4605580.12129492608790104No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA4288680.11294888453021325No Hit
GCTTCACAATGATAGGAAGAGCCGACAT3900210.10271793860432185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)