FastQCFastQC Report
Wed 22 Feb 2023
EGAF00003946941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003946941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences321094411
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA6085110.1895115514794806No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC5902370.18382039044584927No Hit
CCACCTACTAAGAACGGCCATGCACCAC5522330.17198461919039754No Hit
TTCGGTCTTGATTAATGAAAACATTCTT5226760.16277953838318288No Hit
CGTTCGTTATCGGAATTAACCAGACAAA5179280.16130084556345642No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA5160770.16072437959687813No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA4840740.15075752906829637No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA4654870.14496888891659968No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC4501220.1401836919547005No Hit
CTACACCTCTCATGTCTCTTCACCGTGC4151940.12930589439627463No Hit
ACACCCTCATGTCTCTTCACCGTGCCAG3572430.11125793154960893No Hit
GCTTCACAATGATAGGAAGAGCCGACAT3305200.10293545719797657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)