FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003947000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003947000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10987668
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGCTCGCGTGTAGATCTC332350.30247546613166687Illumina Single End PCR Primer 1 (97% over 34bp)
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA200150.1821587619866199No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT136810.1245123168992729No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT134860.12273760000757211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)