FastQCFastQC Report
Wed 8 May 2024
EGAF00003948238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences620246
Total Bases39 Mbp
Sequences flagged as poor quality0
Sequence length63
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCT18890.3045565791637512No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC13160.21217387939623955No Hit
GTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGG6510.10495835523324616No Hit
AGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCTTTCCAAGGAAT6360.10253995995137413No Hit

[OK]Adapter Content

Adapter graph