FastQCFastQC Report
Wed 8 May 2024
EGAF00003948242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences622854
Total Bases39.2 Mbp
Sequences flagged as poor quality0
Sequence length63
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCT17700.28417574584091937No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC13540.2173864180048615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6650.10676659377639063No Hit
AGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCTTTCCAAGGAAT6320.10146840190478025No Hit
GTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGG6240.10018399175408683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)