FastQCFastQC Report
Wed 8 May 2024
EGAF00003948252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560819
Total Bases35.3 Mbp
Sequences flagged as poor quality0
Sequence length63
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC26280.46860038622086625No Hit
TCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCT20650.36821149069485876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19520.3480623873299585No Hit
GTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGG9900.1765275427544359No Hit
CGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAAC7820.13943892771107969No Hit
TCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG7560.13480285083066018No Hit
TTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGC6770.12071630954015466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)