FastQCFastQC Report
Tue 7 May 2024
EGAF00003948272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431596819
Total Bases65.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20022290.4639118992209254No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14346120.33239633306935934No Hit
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5633590.13052899724916647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)