FastQCFastQC Report
Sun 5 May 2024
EGAF00003948295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429043355
Total Bases64.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15557510.36260927523280256No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13316180.31036910011110647No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6017270.14024853036122656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)