FastQCFastQC Report
Sat 4 May 2024
EGAF00003948343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488177047
Total Bases73.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT61747481.2648583209607558No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA54875111.1240821406337034No Hit
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC17570820.3599272048527919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)