FastQCFastQC Report
Fri 3 May 2024
EGAF00003948344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470474351
Total Bases71 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT106105752.2552929777036876No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA77366641.6444390610360817No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC14655970.31151475035458415No Hit
CATAATGGCGAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12870970.27357431861359854No Hit
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGG5808580.12346220336249532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)