FastQCFastQC Report
Sun 5 May 2024
EGAF00003948345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470474351
Total Bases71 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT82573201.7551052427085445No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA80482531.7106677511522832No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC13463120.2861605520340045No Hit
CATAATGGCGAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10923710.23218502723435394No Hit
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGG6935240.14740952371280278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)