FastQCFastQC Report
Sat 4 May 2024
EGAF00003948346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512458593
Total Bases77.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCGAGTCTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT32672110.6375560961663882No Hit
TACCGAGTCTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17552030.3425063066510039No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG15807450.30846297078289014TruSeq Adapter, Index 6 (97% over 35bp)
TACCGAGTCTCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7564700.1476158289339096No Hit
TACCGAGTCTCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5504160.10740692175299323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)