FastQCFastQC Report
Fri 3 May 2024
EGAF00003948347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512458593
Total Bases77.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCGAGTCTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28997520.5658509857400322No Hit
TACCGAGTCTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18940450.36959961758315174No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC16466470.3213229366221204Illumina Single End Sequencing Primer (100% over 31bp)
TACCGAGTCTCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7816890.15253700702409725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)