FastQCFastQC Report
Tue 7 May 2024
EGAF00003948348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448712663
Total Bases67.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAATGGAGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT44380170.9890554392488808No Hit
AGAAATGGAGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA34290030.7641868132435568No Hit
AGAAATGGAGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5917070.13186768477715102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)