FastQCFastQC Report
Sun 5 May 2024
EGAF00003948351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430438820
Total Bases64.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT33662020.782039593919526No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA27930830.648891984231348No Hit
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5814330.1350791269244721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)