FastQCFastQC Report
Fri 3 May 2024
EGAF00003948353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517371885
Total Bases78.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC43

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGCCGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT53895851.0417235950113524No Hit
AGGCCCGCCGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA43752480.845667908684292No Hit
AGGCCCGCCGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10113750.19548317744401594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)