FastQCFastQC Report
Sat 4 May 2024
EGAF00003948354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521260590
Total Bases78.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATACGCAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT42748720.8201026668829884No Hit
ATATACGCAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA24405260.4681969147140013No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG10179390.19528409005560923TruSeq Adapter, Index 8 (97% over 35bp)
ATATACGCAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10108610.1939262279544287No Hit
ATATACGCAGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6636070.12730810898249567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)