FastQCFastQC Report
Sat 4 May 2024
EGAF00003948355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521260590
Total Bases78.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATACGCAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT36063290.6918476227024951No Hit
ATATACGCAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA24682710.47351958835023383No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC10921900.209528596819491Illumina Single End Sequencing Primer (100% over 31bp)
ATATACGCAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8831000.1694162223159821No Hit
ATATACGCAGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6512660.12494057914487647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)