FastQCFastQC Report
Fri 10 May 2024
EGAF00003948356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409870110
Total Bases61.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22098900.5391683721459952No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15977470.3898178864518811No Hit
CCGTAAATTACGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5914890.14431132828885718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)