FastQCFastQC Report
Tue 7 May 2024
EGAF00003948360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450449747
Total Bases68 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGATCTCATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT37033890.8221536419244564No Hit
CTTGATCTCATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA25050240.5561161964644193No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG12468080.27679180825469524TruSeq Adapter, Index 7 (97% over 34bp)
CTTGATCTCATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8685750.1928239511254515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)