FastQCFastQC Report
Tue 27 Dec 2022
EGAF00003948362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410067987
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG33166200.8087975909224048TruSeq Adapter, Index 6 (97% over 35bp)
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28679020.6993723213999633No Hit
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18573360.45293367414218566No Hit
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7617890.1857713901475562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)