FastQCFastQC Report
Sat 4 May 2024
EGAF00003948373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433624360
Total Bases65.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC42

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19694100.45417420737156No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15448320.3562604278043789No Hit
GTTGACGAATAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5533520.12761091189618592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)