FastQCFastQC Report
Tue 7 May 2024
EGAF00003948374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445505704
Total Bases67.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAAAACCCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22417250.5031865989307289No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG12520030.281029622911405TruSeq Adapter, Index 7 (97% over 37bp)
CAGAAAACCCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11914050.26742755239784766No Hit
CAGAAAACCCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6210550.13940450019468215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)