FastQCFastQC Report
Tue 13 Dec 2022
EGAF00003948375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445505704
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAAAACCCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19068510.4280194356389206No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC14344040.32197208411051004Illumina Single End PCR Primer 1 (96% over 31bp)
CAGAAAACCCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12552400.28175621293504244No Hit
CAGAAAACCCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5030410.11291460367025964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)