FastQCFastQC Report
Sun 5 May 2024
EGAF00003948377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445323699
Total Bases67.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTATGCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT32921810.7392781941299738No Hit
TATTATGCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA25035040.5621762339668341No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC21778030.48903819960410416Illumina Single End Sequencing Primer (100% over 31bp)
TATTATGCTTCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC9880010.22186131171968013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)