FastQCFastQC Report
Sat 4 May 2024
EGAF00003948448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496441076
Total Bases74.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT47743820.9617217895160634No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA35458490.7142537496232483No Hit
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC10693620.21540562449348977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)