FastQCFastQC Report
Tue 7 May 2024
EGAF00003948450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454126159
Total Bases68.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGAGCAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18095140.3984606400971497No Hit
GCACGAGCAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9157310.20164682915788604No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG6266840.137997776076141TruSeq Adapter, Index 13 (97% over 37bp)
GCACGAGCAGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4931830.10860043849621091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)