FastQCFastQC Report
Mon 6 May 2024
EGAF00003948451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454126159
Total Bases68.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGAGCAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16214940.35705804826803644No Hit
GCACGAGCAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10347170.2278479183578588No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC7569590.16668473837024658Illumina Single End Sequencing Primer (100% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)