FastQCFastQC Report
Thu 2 May 2024
EGAF00003948466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513058175
Total Bases77.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT63493531.2375503031405748No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA49994570.9744425181413394No Hit
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC12888190.25120328703465256No Hit
CTCCACGCAAGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7218900.1407033422671805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)